Thanks for the help. SSL files get updated now, but still errors.
ls -l harris-architect.com/
total 12
-rw-r–r-- 1 root root 1960 Feb 5 05:58 cert.pem
-rw-r–r-- 1 root root 3607 Feb 5 05:58 fullchain.pem
-rw------- 1 root root 1679 Feb 5 05:58 privkey.pem
When accessing the site is still showing Insecure Connection and not accessible.
SSL checker still claiming the cert has not been renewed or setup incorrectly
Error log
2019-02-05 06:11:04.689692 [ERROR] Invalid rewrite directive: SetEnv htaccessWorking true
2019-02-05 06:11:04.689696 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689700 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689704 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689708 [ERROR] Invalid rewrite directive: php_value upload_max_filesize 511M
2019-02-05 06:11:04.689712 [ERROR] Invalid rewrite directive: php_value post_max_size 511M
2019-02-05 06:11:04.689716 [ERROR] Invalid rewrite directive: php_value memory_limit 512M
2019-02-05 06:11:04.689726 [ERROR] Invalid rewrite directive: php_value mbstring.func_overload 0
2019-02-05 06:11:04.689731 [ERROR] Invalid rewrite directive: php_value default_charset ‘UTF-8’
2019-02-05 06:11:04.689735 [ERROR] Invalid rewrite directive: php_value output_buffering 0
2019-02-05 06:11:04.689739 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689743 [ERROR] Invalid rewrite directive: SetEnv htaccessWorking true
2019-02-05 06:11:04.689747 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689751 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689755 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689818 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689823 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689827 [ERROR] Invalid rewrite directive: AddType image/svg+xml svg svgz
2019-02-05 06:11:04.689831 [ERROR] Invalid rewrite directive: AddEncoding gzip svgz
2019-02-05 06:11:04.689835 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689839 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689843 [ERROR] Invalid rewrite directive: DirectoryIndex index.php index.html
2019-02-05 06:11:04.689847 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689851 [ERROR] Invalid rewrite directive: AddDefaultCharset utf-8
2019-02-05 06:11:04.689855 [ERROR] Invalid rewrite directive: Options -Indexes
2019-02-05 06:11:04.689860 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689864 [ERROR] Invalid rewrite directive: ModPagespeed Off
2019-02-05 06:11:04.689868 [INFO] Rewrite directive: bypassed.
2019-02-05 06:11:04.689872 [ERROR] Invalid rewrite directive: ErrorDocument 403 //
2019-02-05 06:11:04.689876 [ERROR] Invalid rewrite directive: ErrorDocument 404 //
2019-02-05 06:11:04.689881 [INFO] RewriteFile [.htaccess] parsed, return 0.
2019-02-05 06:11:04.689917 [INFO] [PlainConf] [virtualHostConfig:] start parsing file /usr/local/lsws/conf/vhosts/hostchestnut.com/vhost.conf
2019-02-05 06:11:04.706866 [INFO] [PlainConf] [virtualHostConfig:] RCS checkin config file /usr/local/lsws/conf/vhosts/hostchestnut.com/vhost.conf0 OK.
2019-02-05 06:11:04.707656 [INFO] [config:server:vhosts:vhost:hostchestnut.com] config conxtext /.filemanager.
2019-02-05 06:11:04.707779 [INFO] RewriteFile [/home/hostchestnut.com/public_html/.htaccess] parsed, return 0.
2019-02-05 06:11:04.707895 [INFO] [PlainConf] [virtualHostTemplate:] start parsing file /usr/local/lsws/conf/templates/ccl.conf
2019-02-05 06:11:04.724565 [INFO] [PlainConf] [virtualHostTemplate:] RCS checkin config file /usr/local/lsws/conf/templates/ccl.conf0 OK.
2019-02-05 06:11:04.724725 [INFO] [PlainConf] [context:/] rewrite add rules [rewritefile .htaccess]
2019-02-05 06:11:04.724782 [INFO] [PlainConf] [virtualHostTemplate:] start parsing file /usr/local/lsws/conf/templates/phpsuexec.conf
2019-02-05 06:11:04.740571 [INFO] [PlainConf] [virtualHostTemplate:] RCS checkin config file /usr/local/lsws/conf/templates/phpsuexec.conf0 OK.
2019-02-05 06:11:04.740727 [INFO] [PlainConf] [context:/] rewrite add rules [rewritefile .htaccess]
2019-02-05 06:11:04.740804 [INFO] [PlainConf] [virtualHostTemplate:] start parsing file /usr/local/lsws/conf/templates/rails.conf
2019-02-05 06:11:04.755383 [INFO] [PlainConf] [virtualHostTemplate:] RCS checkin config file /usr/local/lsws/conf/templates/rails.conf0 OK.
2019-02-05 06:11:04.755492 [INFO] [PlainConf] [context:/] rewrite add rules [rewritefile .htaccess]
2019-02-05 06:11:04.755539 [NOTICE] [ZConfManager] No VHosts added, do not send!
2019-02-05 06:11:04.756174 [NOTICE] [AutoRestarter] new child process with pid=14191 is forked!
2019-02-05 06:11:04.757020 [NOTICE] [child: 14191] Successfully change current user to nobody
2019-02-05 06:11:04.757065 [NOTICE] Child: 14191] Core dump is enabled.
2019-02-05 06:11:04.757124 [NOTICE] [Child: 14191] Setup swapping space…
2019-02-05 06:11:04.757236 [NOTICE] [Child: 14191] LiteSpeed/1.4.43 Open starts successfully!